[Bioperl-l] Remove columns containing more than 75% gaps in an alignment

Daniel Gerlach Daniel.Gerlach at medecine.unige.ch
Tue Mar 4 07:35:03 EST 2008


Hello,

Is it possible to remove only columns containing e.g. more than 75% gaps 
from an alignment? I was thinking at

$aln2 = $aln->remove_gaps('-'[,$all_gaps_columns])

This would allow me to remove all gaps or gap-only columns but not using 
a threshold.

Greetings, Daniel


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