[Bioperl-l] Bio::SeqIO bug

[Brian Osborne]

Hilmar and Michael,

Using the latest code, bioperl-live, the pertinent EMBL product is:

FT		/product="Probablenicotinate-nucleotide-
FT		dimethylbenzimidazol phosphoribosyltransferase CobT"

You can see that the return has not been replaced by a space, as Michael
said. However the "p" is no longer missing.

Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Hilmar Lapp
Sent: Wednesday, June 23, 2004 11:23 AM
To: michael watson (IAH-C)
Cc: Bioperl
Subject: Re: [Bioperl-l] Bio::SeqIO bug

This may have been fixed in 1.4.x. Did you try a more recent release?
-hilmar

On Tuesday, June 22, 2004, at 11:28  AM, michael watson (IAH-C) wrote:

> Hi
>
> I am using bioperl 1.2.3 on linux.
>
> When converting from GenBank to EMBL for the RefSeq entry NC_002945,
> the
> following conversion occurs for CDS 2450558..2451643:
>
> /product="Probable
> nicotinate-nucleotide-dimethylbenzimidazol
> phosphoribosyltransferase CobT"
>
> To
>
> FT
> roduct="Probablenicotinate-nucleotide-dimethylbenzimidazol
> FT                   phosphoribosyltransferase CobT"
>
> Note the missing "p" from the FT entry "product", plus the missing
> spaces in the product text (presumably because "\n"s have been removed,
> but in this case they should be replaced by spaces)
>
> Rather odd??
>
> Mick
>
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>
>
--
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
-------------------------------------------------------------


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