[Bioperl-l] ABI file parsing

[Heikki Lehvaslaiho]

Lincoln Stein wrote:
> 
> I'm willing to rename Bio::Graphics to Bio::Graphics::FeatureMap.  For
> backward compatibility, there will need to be a Bio::Graphics.pm
> module that loads Bio::Graphics::FeatureMap, though.


Sounds like a good plan.

	-heikki

> Lincoln
> 
> Malay writes:
>  > > I don't think that we should namespace via graphics
>  > > file format,
>  > > because it should someday be possible to have the
>  > > same layout module
>  > > produce GD, SVG and postscript output (it's really a
>  > > matter of
>  > > encouraging the ensembl folk to turn their
>  > > GD/SVG/PS/WBMP wrapper into
>  > > a CPAN module).  I would prefer a namespace based on
>  > > what the layout
>  > > module is trying to draw:
>  > >
>  > >        Bio::Graphics::FeatureMap
>  > >        Bio::Graphics::Chromatogram
>  > >        Bio::Graphics::Pedigree
>  > >
>  >
>  > I also think that's the way it should be done. My own
>  > BioSVG modules also has the same structure.
>  >
>  > BioSVG::Chromatogram
>  > BioSVG::Plasmid
>  > ...
>  >
>  > I can't wait to upload my modules and get some
>  > feedback on them.
>  >
>  > Malay
>  >
>  > __________________________________________________
>  > Do You Yahoo!?
>  > Yahoo! Health - your guide to health and wellness
>  > http://health.yahoo.com
> 
> --
> ========================================================================
> Lincoln D. Stein                           Cold Spring Harbor Laboratory
> lstein@cshl.org                                   Cold Spring Harbor, NY
> Positions available at my lab: see http://stein.cshl.org/#hire
> ========================================================================

-- 
______ _/      _/_____________________________________________________
      _/      _/                      http://www.ebi.ac.uk/mutations/
     _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
    _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
   _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
  _/  _/  _/  Cambs. CB10 1SD, United Kingdom
     _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
___ _/_/_/_/_/________________________________________________________