[Bioperl-l] operator overloading: Seq->subseq & Seq->trim

Ewan Birney birney@ebi.ac.uk
Wed, 31 Oct 2001 15:33:22 +0000 (GMT)


On Wed, 31 Oct 2001, Jason Eric Stajich wrote:

> I'm pulling subseqs out of larger sequences a lot - I am using Locations
> for this - I would like to be able to specify $seq->subseq($location) to
> pull a subseq and if the strand is -1 one would get the revcom.
> 
> Does this sound okay?

I've noticed that this would be very useful.

What are you going to do with SplitLocations?


> 
> -- 
> Jason Stajich
> Duke University
> jason@cgt.mc.duke.edu
> 
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> 

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