Bioperl: start, end, strand

Andrew Dalke dalke@acm.org
Mon, 19 Jun 2000 00:57:34 -0600


Steve said:
>Some other reasons why we can't rely on start vs. end comparisons to
>determine the strand:
>
>1) Single-residue features, (start = end).


Just pointing out that that's an aspect of how ranges are defined.
If a single residue was denoted [start:start+1] then there wouldn't
be the problem.  This point alone should not be enough to make a
choice.

>2) Circular sequences, (the last base is 5' of the first).


But this one can :)

                    Andrew
                    dalke@acm.org


=========== Bioperl Project Mailing List Message Footer =======
Project URL: http://bio.perl.org/
For info about how to (un)subscribe, where messages are archived, etc:
http://www.techfak.uni-bielefeld.de/bcd/Perl/Bio/vsns-bcd-perl.html
====================================================================