Bioperl: Help with blast and vector trimming

[Jonathan Epstein]

I'm trying to use the bioPerl blast functionality, initially for trimming
vector from some EST's.

When I run the sample:
  perl ./blast_seq.pl seq/seqs.fasta -eid -prog blastp -db yeast -signif
1e-5 -table 2 >runseqs.out
I encounter the following error, even though the named file exists.

  UX:sh (sh): ERROR:
/disk3/people/epstein/perl/lib/site_perl/Bio/Tools/Blast/Run/postclient.pl:
Not found
No Blast results saved.


As long as I have your attention, trimming vector sequence looks to be
pretty simple using these utilities, but if anyone has a little bit of code
to contribute, I would be grateful.

Regards,

- Jonathan



Jonathan Epstein                                Jonathan_Epstein@nih.gov
Unit on Biologic Computation                    (301)402-4563
Office of the Scientific Director               Bldg 31, Room 2A31
Nat. Institute of Child Health and Development  31 Center Drive
National Institutes of Health                   Bethesda, MD 20892

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