[Open-bio-l] [Bioperl-l] FASTQ support in Biopython, BioPerl, and EMBOSS

[Peter]

On Mon, Jul 27, 2009 at 2:06 PM, Chris Fields<cjfields at illinois.edu> wrote:
>
>>
>> Depending on your email viewer this may not be obvious, but
>> the sequence line is length 41 but the quality line is only 40
>> characters. And again, I also suspect a problem in the mapping
>> itself.
>>
>> Peter
>
> I added this (and the others) to our ticket tracking this.  Looks like
> solexa conversion either way is borked, which is very likely an issue with
> conversion.
>
> chris

I'm afraid so. I'll keep an eye on that then (Bug 2857)
http://bugzilla.open-bio.org/show_bug.cgi?id=2857

Peter