[Open-bio-l] biosql schema in Oracle
Matthew Pocock
matthew_pocock@yahoo.co.uk
Mon, 12 Aug 2002 14:16:11 +0100
Hi.
I am interested in and have used BioSQL for orthogonal persistance of
BioJava sequence object & feature hierachies. Also, I've used it to
store swissprot. I am only interested in storing genbank & swissprot via
the existing biojava sequence object APIs, and for my needs don't have
full ascii-art round tripping of these file formats as a requirement.
Semantic round tripping would be good, but this (imho) is best done by
having semantic round tripping from the file format to the object layer
and between the object layer and biosql. Note, I do not have sematic
identity as a requirement, just round tripping. Are we going to put a
use cases document (intended, actual and wish-list) together?
Matthew
Hilmar Lapp wrote:
> So, you're calling for a use-case document listing what gave rise to the
> design?
>
> Has something like that been written up by anyone of the original
> hackathon participants?
>
> -hilmar
>
> On Saturday, August 10, 2002, at 07:39 AM, Wiepert, Mathieu wrote:
>
>> I want to suggest that you make it clear that the bioSQL schema was
>> originally designed to support genbank data, and not anything more.
>> -Mat
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