[EMBOSS] shufflseq output redirection for multiple shuffles

[Peter Rice]

Hi Anand,

You can run shuffleseq 5 times, with one shuffle (the default) and give 
a different output filename each time.

shuffleseq input.fasta output1.fasta

and so on...

Hope that helps

Peter Rice
EMBOSS Team

On 28/11/2018 03:57, Anandkumar Surendrarao wrote:
> Greetings!
> 
> If I have a multifasta file - lets say input.fasta with 5 chromosomal 
> sequences,
> and I want to shuffle the entire genome 5 times,
> 
> how can I redirect each of the 5 shuffled genomes to a 
> different filename - output1.fasta, ... output5.fasta?
> 
> Currently, my syntax redirects all 5 shuffled versions to the same 
> output filename, which is not optimal. Any suggestions?
> 
> Thanks a bunch.
> 
> - Anand
> _____
> *Anandk*umar *S*urendra*rao*, PhD
> +1.530.574.5134
> +91.91760.70887
> 
> 
> 
> _______________________________________________
> EMBOSS mailing list
> EMBOSS at mailman.open-bio.org
> http://mailman.open-bio.org/mailman/listinfo/emboss
> 

---
This email has been checked for viruses by AVG.
https://www.avg.com