[EMBOSS] Handling of local file input in Jemboss

[Mahmut Uludag]

> please disregard my previous email - I must have made a mistake in my rebuild. After rebuilding more carefully again, the problem seems to have disappeared. My apologies for the confusion.

Confused again. I was able to reproduce the problem following the steps 
you described and just checked in a fix in BuildJembossForm class. Have 
you tried updating from CVS before your last rebuild? Since your email 
is about 4 minutes later than I checked in above change to CVS.

Mahmut