[EMBOSS] Pipe not working
Michael Muratet
mmuratet at hudsonalpha.org
Sun Jan 8 16:57:35 UTC 2012
Greetings
It seems like this should work:
$ echo "GATACTAATTGCCCGTGAGGCTTGA" | palindrome -filter
Error: Unable to read sequence 'stdin'
Died: palindrome terminated: Bad value for '-sequence' with -auto
defined
and yet as you can see, it does not. I haven't used it for awhile, but
I recall it used to work.
I've searched the docs and tried all the permutations on the command I
can think of and I'm getting nowhere.
Does anyone see a problem with the command or have a suggestion where
to search for a problem?
Thanks
Mike
Michael Muratet, Ph.D.
Senior Scientist
HudsonAlpha Institute for Biotechnology
mmuratet at hudsonalpha.org
(256) 327-0473 (p)
(256) 327-0966 (f)
Room 4005
601 Genome Way
Huntsville, Alabama 35806
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