[EMBOSS] HTML tag mismatch in acdtable output for fuzzpro

[Scott Markel]

Peter,

Yes, what I generated for you was Windows-based, but we run EMBOSS on both Windows and Linux in Pipeline Pilot.

Regarding a patch, our next release is later in 2012, so whatever is more convenient for you regarding timing is fine with us.

Scott


-----Original Message-----
From: Peter Rice [mailto:pmr at ebi.ac.uk] 
Sent: Tuesday, 06 December 06 2011 12:53 AM
To: Scott Markel
Cc: emboss at lists.open-bio.org; Kristine Briedis
Subject: Re: HTML tag mismatch in acdtable output for fuzzpro

Dear Scott,

On 06/12/2011 00:35, Scott Markel wrote:
> We use BioPerl to build EMBOSS command lines in Pipeline Pilot.  After updating BioPerl to 1.6.9 and EMBOSS to 6.4.0 we noticed a problem.  There are HTML tag mismatches that BioPerl, via XML::Twig, can't handle and skips.  In investigating a bit, it looks like there was a change in the acdtable output.

> And here are the three sets of tag mismatches in the HTML.  All involve an opening<th>  and a closing</td>.

Oops. Well spotted. Simple fix in ajax/acd/ajacd.c ... we have a new 
release due in January when our current funding ends, but will look to 
release a patch for you.

 From the version number, was this mEMBOSS you were using?

regards,

Peter Rice
EMBOSS Team