[EMBOSS] Convert scf to fasta
Philip H. Jones
p.h.jones at liverpool.ac.uk
Mon Apr 26 08:47:44 EDT 2010
Hi
I have a large number of .scf files that I need to batch convert to
fasta format. I thought that abiview would be able to perform this
function but I cannot get abiview to read the .scf files (although
various sources on the internet suggest that it should be able to do
so). It reads and displays .ab1 files with no problems. The webpage
describing input formats (http://emboss.sourceforge.net/docs/themes/SequenceFormats.html
) doesn't mention scf. Is there an EMBOSS application that would
convert .scf to .fa? Any help would be greatly appreciated. I am
running Mac OSX 10.5.8 with EMBOSS 6.1.0-4 installed via fink.
Best wishes,
Phil Jones
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