[EMBOSS] EMBOSS seqret : IntelliGenetics and new DOS lines

[Peter]

Peter Rice wrote:
>
> Thanks for the example files. I will start with those.
>
> Peter C. wrote:
>> I think this is an EMBOSS specific issue. I don't know enough about
>> how all the different EMBOSS parsers work, but is there a single
>> place where you could add automatic handling of either new line
>> convention when reading in text?
>
> Hope so. I think the issue is places where the parsing is checking
> explicitly for \n rather than \n and \r. The solution would be to strip
> both off before parsing. It will need a thorough clean through the
> ajseqread code.

That sounds like a good investment of effort in the long run :)

Peter C.