[EMBOSS] EMBOSS 6.1.0 release now available
Ryan Golhar
golharam at umdnj.edu
Fri Jul 17 15:03:02 UTC 2009
I think the sequence alignment programs or anything dealing with
matrices would be a good first start. Even (as Hamish) mentioned,
making use of multi-core systems would be good.
We are interested in doing some CUDA programming here. We are doing
some training in about a month. Based on that, we'll see how well we
know it and what we want to pursue. Maybe we can help you out a bit in
this?
Peter Rice wrote:
> Ryan Golhar wrote:
>> Any thought on implementing some of the algorithms using CUDA when
>> possible on GPUs? This could speed up some programs significantly.
>
> Yes indeed.
>
> At BOSC/ISMB last month we were discussing closer collaborations with
> the other Open Bio FOundation projects.
>
> One of these is BioManyCores which is aiming at OpenCL programming but
> is currently concentrating on CUDA.
>
> When our new workstations are delivered we will be looking into CUDA.
>
> Which applications would you most like to speed up? (current EMBOSS
> programs, and suggestions for new ones)
>
> regards,
>
> Peter Rice
>
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