[EMBOSS] Tree building

[Guy Bottu]

Peter Rice wrote:
> This can be done by adding some new output formats to the existing 
> phylipnew embassy applications. Phylip truncates id names for its own 
> formats. We can extend them, and only truncate for strict phylip format 
> outputs.

Interesting to note the following : standard PHYLIP format reserves the 
first 10 characters for the name and has the sequence start at position 
11. But some programmers like the one of PhyML use a format they call 
PHYLIP, which however allows a name of any length but then demands that 
there be a space between the name and the sequence. I already had 
trouble when I used a standard PHYLIP file made by PHYLIP or EMBOSS with 
a name of 10 characters as input to PhyML.

	Guy Bottu