[EMBOSS] Genpept entry in MSE

[Peter Rice]

On 15/12/09 15:56, Peter wrote:
> On Tue, Dec 15, 2009 at 3:26 PM, Steve Taylor
> <stephen.taylor at imm.ox.ac.uk>  wrote:
>>
>> I didn't specify any format. I assumed it would pick it up...
>
> Emboss is normally pretty good at deducing file formats, so I
> would have expected it to cope too.
>
>> However, I still get the error if I use
>>
>> mse -sformat1 genpept -sequence ACN78417.pep
>>
>> Is this what you mean?
>
> Probably - although I don't think I have ever used mse myself.
>
> Hopefully an EMBOSS developer can enlighten us.

Which version of EMBOSS are you running?

We are looking into improving support for genpept and the refseq 
variants in a future release.

Genpept was cleaned up in one of the patches for 6.1.0 so this should 
address your problem.

regards,

Peter Rice