[EMBOSS] Trimming illumina short reads based on quality

[zen lu (RI)]

The fastx-toolkit may be what you are looking for:
http://hannonlab.cshl.edu/fastx_toolkit/
________________________________________
From: emboss-bounces at lists.open-bio.org [emboss-bounces at lists.open-bio.org] On Behalf Of michael watson (IAH-C) [michael.watson at bbsrc.ac.uk]
Sent: 01 December 2009 14:33
To: emboss at lists.open-bio.org
Subject: [EMBOSS] Trimming illumina short reads based on quality

Hi

I'm sorry if I've not been keeping up to date on what is doubtless a hot topic.

Does EMBOSS allow one to trim short reads based on quality data (from a fastq file)?

If not, I have read that it is planned - any idea when it will be implemented?

Otherwise, alternative suggestions are welcome!

Thanks
Mick


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