[EMBOSS] Trimming illumina short reads based on quality

[Ryan Golhar]

Michael,

Doesn't Illumina provide tools to do this?  I know with ABI Solid data, 
they have a perl script capable of trimming data based on quality scores.

Ryan


michael watson (IAH-C) wrote:
> Hi
> 
> I'm sorry if I've not been keeping up to date on what is doubtless a hot topic.
> 
> Does EMBOSS allow one to trim short reads based on quality data (from a fastq file)?
> 
> If not, I have read that it is planned - any idea when it will be implemented?
> 
> Otherwise, alternative suggestions are welcome!
> 
> Thanks
> Mick
> 
> 
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