[EMBOSS] sorting and/or filtering EMBOSS water output by score
    Timur Shtatland 
    tshtatland at gmail.com
       
    Tue Jun  5 16:09:32 UTC 2007
    
    
  
Hi,
Can EMBOSS water produce the output in which the hits are reverse sorted
and/or filtered by score?
For example, I would like to use something like this to order alignments
from best to worst, and display only alignments above a certain minimum
score:
water [other options] -orderby score -scoremin 30.0
By default, alignments are displayed in the order of sequence occurrence in
the input file, and all alignments are shown.
Thank you.
Timur Shtatland
    
    
More information about the EMBOSS
mailing list