[EMBOSS] extracting noncoding regions

[Mukatira, Suraj]

I use BioPerl as well. Extraction of non-coding regions and features
like intron, UTR etc. would certainly be useful from within EMBOSS.
Suraj Mukatira


-----Original Message-----
From: emboss-bounces at lists.open-bio.org
[mailto:emboss-bounces at lists.open-bio.org] On Behalf Of Ryan Golhar
Sent: Tuesday, October 31, 2006 11:03 AM
To: 'Peter Rice'; 'Shrish Tiwari'
Cc: emboss at emboss.open-bio.org
Subject: Re: [EMBOSS] extracting noncoding regions

I think that would be a useful feature...I have a need for it now and
currently use a Bioperl script to parse out noncoding regions from a
GenBank entry...


> -----Original Message-----
> From: emboss-bounces at lists.open-bio.org 
> [mailto:emboss-bounces at lists.open-bio.org] On Behalf Of Peter Rice
> Sent: Tuesday, October 31, 2006 10:34 AM
> To: Shrish Tiwari
> Cc: emboss at emboss.open-bio.org
> Subject: Re: [EMBOSS] extracting noncoding regions
> 
> 
> Hi Shrish,
> 
> Shrish Tiwari wrote:
> > Hi!
> > Is there a way of extracting the noncoding regions of a 
> genome using 
> > an EMBOSS program?
> 
> That is a simple change to coderet to return non-coding 
> sequence (exclude the 
> CDS and mRNA features).
> 
> Does anyone else want this? We can do it for the next release.
> 
> regards,
> 
> Peter
> _______________________________________________
> EMBOSS mailing list
> EMBOSS at lists.open-bio.org 
> http://lists.open-> bio.org/mailman/listinfo/emboss
> 

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