[EMBOSS] Antwort: extracting noncoding regions

[David.Bauer at schering.de]

Hm,

if the genome is annotated, you could use
maskfeat -type mRNA (or -type CDS)
to mask all transcribed or translated regions with N.

HTH,
David.

emboss-bounces at lists.open-bio.org schrieb am 31/10/2006 13:41:19:

> Hi!
> Is there a way of extracting the noncoding regions of a genome using
> an EMBOSS program?
> Shrish
> Dr. Shrish Tiwari
> E503, Centre for Cellular and Molecular Biology
> Uppal Road, Hyderabad - 500 007, INDIA
> Phone: 91-40-27192777
> Alternate email: shrish.geo at yahoo.com
>
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