[EMBOSS] compiling embassy programs
    Deborah Weisman 
    dvorah at agri.huji.ac.il
       
    Tue Jul 25 15:12:13 UTC 2006
    
    
  
I have successfully compiled, installed and tested emboss 4 on a new
Redhat ES 4 machine.
I am trying to install the embassy programs, and am having trouble with
many of them.
The ones that installed without problems are:
EMNU-1.05  ESIM4-1.0.0  HMMER-2.3.2  MEME-2.3.1  MSE-1.0.0  TOPO-1.0.0
Most of the others are giving  problems.
Starting with Phylip, since the docs claim that Phylip also should
install without problems:
Since emboss is installed into /usr/local , I did:
 ./configure --prefix=/usr/local --enable-localforce
and then make gives:
clique.c: In function `emboss_getoptions':
clique.c:160: error: void value not ignored as it ought to be
make: *** [all-recursive] Error 1
I downloaded the current version of phylip, without emboss additions,
from :
ftp://evolution.genetics.washington.edu/pub/phylip/phylip-3.65.tar.gz
and it compiles and runs with no problems.
Do you have any suggestions as to what I should be looking at?
Thank you,
Deborah Weisman
    
    
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