[EMBOSS] (no subject)

[Simon Andrews]

On 29 Aug 2006, at 12:37, Shrish Tiwari wrote:

> Hi!
>
> Is there a program in EMBOSS to extract the coordinates of exons?


It depends what you mean.

If you want to extract the transcript sequence from a genomic  
sequence with an mRNA feature defined in its header then you can use  
coderet.

If you want to figure out where the exon positions are in a sequence  
and you have an mRNA and a genomic sequence then you can use est2genome.

If you just want to view the header annotation then entret will give  
you that.

Simon.