[EMBOSS] Jemboss launch killing cpu

[Michael Leong]

Hi.

I'm trying to setup Jemboss on my lan and trying to use the java webstart 
to launch it.  However, on the Jemboss login window, when the progress 
meter reaches about 50%, it locks up and eats all teh cpu.

Thx,
mike

Here are the steps at I took to install it:

#------------------------------------------------------
untar EMBOSSS 2.10.0
untar tomcat 5.5.9
download emboss install script for tomcat 5.5.x
untar axis 1.2
mkdir /opt/emboss-data/soap
chmod 777 /opt/emboss-data/soap
chmod a+t /opt/emboss-data/soap

replace install script w/ one for tomcat 5.5.x
run ./install-jemboss-server.sh

install options:
client-server
os: linux
ip: 192.168.2.108
ssl: yes
port: 8443
java: jdk v1.5
unix auth: yes
tomcat uid: 1000
auth method: shadow
embassy pkgs: no
clustalw: /usr/bin
primer3_core: <blank>
auto deploy: yes
modifed server.xml as told
got warning about javax.activation.DataHandler and 
javax.mail.internet.MimeMultipart not found

    chown root /opt/emboss/bin/jembossctl
    chmod u+s /opt/emboss/bin/jembossctl

cd /opt/emboss/share/EMBOSS/jemboss/utils
./makeJNLP.sh

edit /opt/emboss/share/EMBOSS/jemboss/jnlp/index.html and Jemboss.jnlp to 
proper webserver

copy /opt/emboss/share/EMBOSS/jemboss/jnlp/* to webserver
#------------------------------------------------------