[EMBOSS] Including exonerate in EMBOSS?

[Stefanie Lager]

Hi,

Has anyone considered including the exonerate alignment algorithm
(Slater & Birney 2005) into EMBOSS? Exonerate could replace most of the
alignment algorithms currently available in EMBOSS, and it's much
faster. Exonerate would probably also benefit, by addition of yet more
output options and integration with current EMBOSS applications.    

Stefanie


Slater GS, Birney E. 
Automated generation of heuristics for biological sequence comparison.
BMC Bioinformatics. 2005 Feb 15;6(1):31.
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