installing EMBOSS 2.4.1 and EMBASSY

[Tõnu Margus]

Hi,

First problem  installing EMBOSS  ( op-sys LINUX slackware 8.0)
./configure runs ok but  make gives an error

% make 
..........
gcc -g -O2 -o .libs/abiview abiview.o  ../nucleus/.libs/libnucleus.so ../ajax/.libs/libajaxg.so ../ajax/.libs/libajax.so ../plplot/.libs/libplplot.so -L/usr/X11R6/lib -lX11 -lm -Wl,--rpath -Wl,/usr/local/bin1/emboss/lib
../plplot/.libs/libplplot.so: undefined reference to `atexit'
collect2: ld returned 1 exit status
make[2]: *** [abiview] Error 1

in some reason it didn't find   atexit

so I comment it out from     plplot/tek.c 
/*#ifdef STDC_HEADERS
    if (atexit(tty_atexit))
        (void) fprintf(stderr, "Unable to set up atexit handler.\n");
#endif*/
    return;

Now it compiles without problems

   


Second problem  arouse  when I tried to install  MEME   ./configure  didn't find the file   ./../../ltconfig

cd /programs/EMBOSS-2.4.1/embassy/MEME-2.3.1/
./configure --prefix=/usr/local/bin1/emboss 

updating cache ./config.cache
./../../ltconfig: ./../../ltconfig: No such file or directory
configure: error: libtool configure failed

Same problems appears with MSE-0.0.4 


PHYLIP and HMMER installed without problems.



Sincerely yours   
Tonu Margus

Estonian Biocenter  & Tartu University
Riia 23 
Tartu 51010
Estonia

E-mail tmargus at ebc.ee







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