How do I specific human genome CHR_01 database at .embossrc file

[Zheng Jin Tu]

Really thanks for these kindly people reply for my message.  Most people sugguest

    method: emblcd
    format: genbank

It works well with this definition.


Best regards,


Zheng Jin Tu
Supercomputing Institute
University of Minnesota

________________________________________________________________________

On Fri, 14 Jun 2002, Charles Plessy wrote:

> Hi,
>
> I used home sequences so I had to reformat the headers to something
> "ncbi compliant" like lcl|foo.
>
> see the formatdb readme for more info :
> http://www.inb.mu-luebeck.de/biosoft/blast/README.formatdb
>
> I had to use formatdb vith the option -o T , to generate more files.
>
> I then used dbiflat normally
>
> Hese is an extract of my embossrc :
>
> DB ngn [
>    type: N
>    method: blast
>    format: ncbi
>    dir: /home/charles/bioinfo/blast
>    indexdir: /home/charles/bioinfo/blast/ngn
>    file: "ngn"
>    release: "0.0"
> ]
>
> Charles
>