dbiblast command
Qingjuan Gu
qingjuan at wistar.upenn.edu
Tue Jul 9 21:34:28 UTC 2002
Hi,
When I use dbiblast command for chromosome database :
# ls -l chromo*
-rwx------ 1 root system 264482 Jul 9 17:28 chromosome.nhr
-rwx------ 1 root system 24464 Jul 9 17:28 chromosome.nin
-rwx------ 1 root system 16248 Jul 9 17:28 chromosome.nnd
-rwx------ 1 root system 108 Jul 9 17:28 chromosome.nni
-rwx------ 1 root system 178637 Jul 9 17:28 chromosome.nsd
-rwx------ 1 root system 4092 Jul 9 17:28 chromosome.nsi
-rwx------ 1 root system 134588104 Jul 9 17:28 chromosome.nsq
-rwx------ 1 root system 84008 Jul 9 17:28 chromosome.ntd
-rwx------ 1 root system 12368 Jul 9 17:28 chromosome.nti
# dbiblast
Index a BLAST database
Database name: chromo
Database directory [.]:
Wildcard database filename [chromo]: chromosome.nin
Release number [0.0]:
Index date [00/00/00]:
N : nucleic
P : protein
? : unknown
Sequence type [unknown]: N
1 : wublast and setdb/pressdb
2 : formatdb
0 : unknown
Blast index version [unknown]: 2
EMBOSS An error in dbiblast.c at line 547:
failed to parse '
#
Does anybody have ideas? what should I input for 'Wildcard databse filename' question?
Thank you very much.
Grace
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