DBIBLAST error when creating blast database

[Peter Rice]

Marcus Claesson wrote:

> Not fully, but at least I don't get any error messages. The ecoli.aa db
> won't show up when I run 'showdb'. 

You need to add the database to your site-wide emboss.defaults file (or 
your own ~/.embossrc file).

We had a suggestion last week to generate the emboss.defaults lines in 
dbiblast - that will help you, but I don't expect to have time until the 
New Year.

The database definition will look like this:

DB ecoliaa [
   type: P format: ncbi method: blast
   dir: /user/claesson/data
   indexdir: /user/classon/data
   comment: "E.coli protein data"
  ]

-- 
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Peter Rice, LION Bioscience Ltd, Cambridge, UK
peter.rice at uk.lionbioscience.com +44 1223 224723