Compseq error

[Sabino Liuni]

Hello everybody

I have received this information from our user about the Compseq program.
Any suggestion

Regards,

sabino Liuni

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I have noticed that the EMBOSS program COMPSEQ calculates incorrectly w-mer 
nucleotide frequencies. For example the result obtained asking for mononuc 
composition is like the following:
Total count 2846880
#
#       Word Obs Count   Obs Frequency  Exp Frequency   Obs/Exp Frequency
#
A       968947              0.3403540                  0.2500000 
1.3614160
C        454493                  0.1596460                  0.2500000 
  0.6385840
G        454493                 0.1596460                   0.2500000 
  0.6385840
T        968947                 0.3403540                   0.2500000 
   1.3614160

It seems sum up A+T and C+G.
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Bioinformatics and Genomic Group - C.N.R.
            Italian EMBnet Node
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