use of full genbank style ids

[Steve Roels]

Hello,

Anyone know if there is a way to force the use of full genbank-style sequence identifiers
in output files?

for example:

>gi|12345|gb|AC00123.4|HUDDR
GGCGCGCCG...

The id used is either "gi" (if fasta format is specified - or no format is specified) or
"gb|AC00123.4|HUDDR" (if ncbi format is specified).

In short (and to be more general), what I want is to have everything up to the first
white-space (i.e. including vertical bars,colons,etc) to be treated as the id.

Thanks,

-Steve


-- 

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Steve Roels, Ph.D.                       
Scientist - Computational Biology        Phone: (617) 761-6820
Millennium Pharmaceuticals, Inc.         FAX:   (617) 577-3568
640 Memorial Drive                       Email: roels at mpi.com
Cambridge, MA 02139-4815
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