[emboss-dev] EMBOSS seqret FASTQ support
Peter Rice
pmr at ebi.ac.uk
Tue Jul 21 03:43:40 EDT 2009
Peter C. wrote:
> Could anyone spot a "but" coming up?
>
> Well, here we are - consider the following single Sanger format
> FASTQ record (originally from the NCBI SRA, I think SRA000271,
> but I would have to double check that).
>
> @071113_EAS56_0053:1:1:182:712
> ACCCAGCTAATTTTTGTATTTTTGTTAGAGACAGTG
> +071113_EAS56_0053:1:1:182:712
> @IIIIIIIIIIIIIIICDIIIII<%<6&-*).(*%+
>
> I would guess the problem is that quality line starts with a @,
Urghh ... I left an extra '@' test in even though I meant to take it out
before the release.
I will make a patch for this ... have to look into a couple of your other
queries at the same time as they are in the same source file.
Thanks
Peter
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