[Dynamite] Is this working now then?

[Ian Holmes]

Just spotted a gotcha in this...

> module Seq {
>         
>         struct LightSeq_momento {
>                 string name;
>                 string seq;
>         };
> 
>         interface LightSeq {
>                 attribute string name;
>                 attribute string seq;

These two should be methods & not attributes I think.
Also I reckon we need a length() method so we don't have to retrieve the
whole sequence (which might, as Ewan pointed out, be a behemoth spanning
several contigs) to find this.

Revised:

> module Seq {
>         
>         struct LightSeqMomento {
>                 string name;
>                 string seq;
>         };
> 
>         interface LightSeq {
>                 string name();
>                 string seq();
>                 int    length();    // need a length method because we might not want to retrieve the whole seq()
>                 string subseq(in long start, in long end);
>                 LightSeqMomento make_LightSeqMomento();
>         };
> 
>         interface DatabaseSeq : LightSeq {
>                 attribute string implementation_id; // implementation unique id
>                 attribute string accession_number;  // biological unique id
>         };
> 
> }