[BioSQL-l] Co-ordinates

Trevor Bell trevorgrahambell at gmail.com
Wed Jan 15 07:05:25 UTC 2014


I worked through the BioSQL tutorial
(http://biopython.org/wiki/BioSQL) and then imported a sequence I am
interested in. Consider the following section of the full GenBank
record of that sequence:

----------
     CDS             155..835
                     /gene="S"
                     /codon_start=1
                     /product="S protein"
                     /protein_id="AAP79717.1"
                     /db_xref="GI:32330472"
----------

Where in the database schema can I find the co-ordinates of the
gene/protein or the genomic region sequenced? I'm interested in the
"155..835" in the example above. I can find the other data in the
database (S, AAP79717, etc.).

With thanks.

-- 
Dr Trevor G. Bell
BSc.(Hons), H.Dip.Ed.(PG), MSc., PhD



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