[BioSQL-l] SQLite support

Chris Fields cjfields at illinois.edu
Tue Nov 24 16:36:33 UTC 2009


On Nov 24, 2009, at 8:27 AM, Peter wrote:

> On Tue, Jul 28, 2009 at 11:58 AM, Peter <biopython at maubp.freeserve.co.uk> wrote:
>> On Thu, Jul 9, 2009 at 1:29 PM, Peter<biopython at maubp.freeserve.co.uk> wrote:
>>> Hi Hilmar,
>>> 
>>> I've filed a BioSQL enhancement bug 2870 for adding an SQLite
>>> schema to BioSQL, and Brad has attached his proposed schema
>>> (converted from that for MySQL) to the bug:
>>> 
>>> http://bugzilla.open-bio.org/show_bug.cgi?id=2870
>>> 
>>> Could you take a look at this please? If you are happy with it, we'd like
>>> to have it included in BioSQL v1.0.2 (even if Biopython is initially the
>>> only Bio* project to support it).
>> 
>> Have you had a chance to look at this yet Hilmar? Brad is keen to
>> include BioSQL support for SQLite in the next release of Biopython
>> (hopefully within the next week or two), but to do this I'd like your
>> blessing, and for the proposed SQLite BioSQL schema to be added
>> to the BioSQL SVN repository.
> 
> Hi again Hilmar,
> 
> Just a reminder about the BioSQL on SQLite proposals - we'd still
> like to ship this with the *next* Biopython release (having skipped it
> for Biopython 1.52 a couple of months back).
> 
> Regards,
> 
> Peter

Just want to add that I would like to see SQLite support as well (I might even feel the need to implement the necessary bioperl-db bits).

chris



More information about the BioSQL-l mailing list