[BioSQL-l] [patch] load_taxonomy.pl script was renamed load_ncbi_taxonomy.pl

[Jay Hannah]

Can someone activate my ('jhannah') commit bit for this biosql-schema? I can commit to bioperl-live, but not biosql-schema.

Or apply the patch below for me?

Thanks,

j
http://clab.ist.unomaha.edu/CLAB/index.php/User:Jhannah




jhannah at jaysnet-MacBook:~/src/biosql-schema$ svn info
Path: .
URL: svn://code.open-bio.org/biosql/biosql-schema/trunk
Repository Root: svn://code.open-bio.org/biosql
Repository UUID: 77cd3915-3943-0410-8c1d-86e8b156039c
Revision: 316
Node Kind: directory
Schedule: normal
Last Changed Author: lapp
Last Changed Rev: 316
Last Changed Date: 2009-07-18 13:24:56 -0500 (Sat, 18 Jul 2009)


jhannah at jaysnet-MacBook:~/src/biosql-schema$ svn diff
Index: doc/schema-overview.txt
===================================================================
--- doc/schema-overview.txt	(revision 316)
+++ doc/schema-overview.txt	(working copy)
@@ -150,7 +150,7 @@
 structure of NCBI's taxonomy database. Each bioentry can be
 associated with only one taxon, but many bioentries can be associated
 with the same taxon. In order to get the most value from these tables
-it's recommended that you use the BioSQL script load_taxonomy.pl
+it's recommended that you use the BioSQL script load_ncbi_taxonomy.pl
 to populate them.
 
 The taxon_name.taxon_id field is meant to store an NCBI
@@ -165,7 +165,7 @@
 parent_taxon_id contains the taxon id of the parent taxon, since there
 should only be one parent in the taxonomic tree. The right_value and
 left_value fields store values that are calculated and entered by the 
-load_taxonomy.pl script. These arbitrary values are the upper and
+load_ncbi_taxonomy.pl script. These arbitrary values are the upper and
 lower bounds of "nested sets", one set for each taxa, where the set 
 of the child taxa is contained within the larger set of the parent 
 taxon. An example would be the set for the species Procyon lotor,  
Index: INSTALL
===================================================================
--- INSTALL	(revision 316)
+++ INSTALL	(working copy)
@@ -449,7 +449,7 @@
 
 With bioperl and bioperl-db installed you are ready to load some data.
 It is advisable to pre-load the NCBI taxonomy database (use
-scripts/load_taxonomy.pl in the biosql-schema package, the details are
+scripts/load_ncbi_taxonomy.pl in the biosql-schema package, the details are
 in its documentation). Otherwise you'll see errors from misparsed
 organisms. 
 

jhannah at jaysnet-MacBook:~/src/biosql-schema$ svn commit
svn: Commit failed (details follow):
svn: Authorization failed