[BioSQL-l] Web front-ends to BioSQL

[Gudmundur A. Thorisson]

Jim. If a Java web-app would be acceptable as the platform for this,  
there is something called Molgenis developed by a group in the  
Netherlands that we are collaborating with. It's a Java-based code- 
generation framework used by several mouse genomics groups for  
microarray data and the like, and  is under consideration by ourselves  
for use in our project:

http://molgenis.sourceforge.net

We were thinking of mixing this in with BioSQL/BioJava for certain  
management & curation tasks. Here's a couple of papers if you care to  
have a closer look:

Smedley et al. Solutions for data integration in functional genomics:  
a critical assessment and case study. Brief Bioinformatics (2008) vol.  
9 (6) pp. 532-44
Swertz et al. Beyond standardization: dynamic software infrastructures  
for systems biology. Nat Rev Genet (2007) vol. 8 (3) pp. 235-43

Best regards ,


              Mummi, Leicester
-----------------------------------------------------------
  Gudmundur A. Thorisson, PhD student,  Brookes lab
  Department of Genetics
  University of Leicester
  University Road
  Leicester, LE1 7RH, UK
  E-mail: gthorisson at gmail.com
  Tel: +44 (0)116 229 7273


On 29 Jan 2009, at 17:44, James Procter wrote:

>
> Chris Fields wrote:
>> Gbrowse, maybe?  There is a BioSQL plugin for it  
>> (Bio::DB::Das::BioSQL):
>>
>> http://gmod.org/wiki/GBrowse#About_Databases
> I'm also in the market for a quick and easy front end - from what I've
> heard from a colleague, GBrowse can be tricky to install. Also - for  
> my
> application we'd like to easily gather sets of proteins and then  
> explore
> their annotation. This is a little out of the scope of GBrowse.
>
> I think there might be a niche needing filling here - would anyone be
> interested in pooling code/resources ?
>
> Jim.
>
> -- 
> -------------------------------------------------------------------
> J. B. Procter  (ENFIN/VAMSAS)  Barton Bioinformatics Research Group
> Phone/Fax:+44(0)1382 388734/345764  http://www.compbio.dundee.ac.uk
> The University of Dundee is a Scottish Registered Charity, No.  
> SC015096.
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