[BioSQL-l] [BioPython] Concerns the update of BioSQL.taxon table

[Peter]

On Tue, Mar 25, 2008 at 3:53 PM, Peter <biopython at maubp.freeserve.co.uk> wrote:
> Hi Eric,
>
>  Your issue is almost certainly due to switching from Biopython 1.44 to
>  1.45, rather than from a prerelease BioSQL to the recently released
>  BioSQL 1.0.0.
>
>  For background, you should read Bug 2422 and the BioSQL thread it points to.
>  http://bugzilla.open-bio.org/show_bug.cgi?id=2422
>
>  Biopython 1.44 never recorded the taxon id (and therefore didn't use
>  the taxon/taxon_name tables)
>  Biopython 1.45 does record the taxon id, and attempts to fill in
>  missing taxon/taxon_name entries
>
>  I'm a little unclear on what is going wrong for you.  Did you pre-load
>  the NCBI taxonomy for example?  The script you are talking about, is
>  this your own?
>
>  Peter
>

P.S. Did you mean to send your original message to the BioSQL list as well Eric?

You need biosql-l at lists.open-bio.org not biosql at lists.open-bio.org

Peter