[BioSQL-l] Re: [Bioperl-l] strange error after changing to RC1.5

[Allen Day]

I'm unable to test the code in PersistentObject.pm as I don't have biosql
set up, but you might try adding this to Reference.pm

  use overload 'ne' => sub { "$_[0]" ne "$_[1]" }

Please let me know if this fixes your error and I'll add this 'ne'
overload to all the Bio::Annotation::* classes on HEAD.

-Allen


On Wed, 9 Mar 2005, Daniel Lang wrote:

> Hi,
> I´m retrieving seq objects from a local biosql db (using the latest cvs 
> verion of bioperl-db) and e.g. writing them with SeqIO. After changing 
> from a cvs version ~ 12/04 to RC1.5 or latest cvs version, I get the 
> following error:
> 
> Operation `ne': no method found,!!left argument in overloaded package 
> Bio::Annotation::Reference,!!right argument has no overloaded magic at 
> /usr/lib/perl5/site_perl/5.6.1/Bio/DB/Persistent/PersistentObject.pm 
> line 534, <GEN1> line 1.!
> 
> The module PersistentObject.pm hasn´t changed and in Reference.pm there 
> is only this change:
> 
> diff bioperl-live-Dec04/Bio/Annotation/Reference.pm 
> bioperl-live/Bio/Annotation/Reference.pm
> 1c1
> < # $Id: Reference.pm,v 1.21 2004/08/19 20:13:32 lapp Exp $
> ---
>  > # $Id: Reference.pm,v 1.22 2005/02/02 22:13:22 allenday Exp $
> 56c56,57
> < # use overload '""' => \&as_text;
> ---
>  > use overload '""' => sub { $_[0]->title || ''};
>  > use overload 'eq' => sub { "$_[0]" eq "$_[1]" };
> 
> I´ve reversed this, but no positive result - the error remains...
> Any hints?
> 
> Thanks in advance,
> Daniel
> 
> 
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>