[BioSQL-l] _removeSequence

[Hilmar Lapp]

The Biojava people will respond to this. Note though that 
Term_Relationship is for storing subject-predicate-object triples of 
terms, so I'm not sure why you want to use it for storing/associating 
annotation. Maybe you meant bioentry_qualifier_value?

	-hilmar

On Jun 21, 2005, at 3:10 AM, Martina wrote:

>
>> Yes. When you insert a sequence you must be prepared that when 
>> inserting its ontology term or tag/value annotation the term may 
>> already be present because another bioentry uses it too.
>
> Ok, the proper way is to catch the SQLException in BIOSQLFeature, test 
> if it is a Dublicate key entry, get the identifier of the term (would 
> that be the BioSQLfeatureId ?) and insert it in the term_relationship 
> table? And there is no nice BioJava method for this, I have to do it 
> "manually", like conn.prepareStatement(..) and stuff?  BioJava spoiled 
> me so!
>
> Martina
>
-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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