[BioSQL-l] location in features
Martina
boehme at mpiib-berlin.mpg.de
Wed Apr 27 11:27:09 EDT 2005
Hi,
I can't get rid of this exception:
org.biojava.bio.BioRuntimeException: BioSQL SeqFeature doesn't have
any associated location spans. seqfeature_id=148
Can anybody help me?
put the sequence in:
Sequence seq = DNATools.createDNASequence(sequence, "AF100928");
Feature.Template templSeq = new Feature.Template();
templSeq.source = "ncbi";
templSeq.type = "gen";
templSeq.location = Location.empty;
seq.createFeature(templSeq);
db.addSequence(seq);
get it out:
seq = db.getSequence("AF100928");
System.out.println(seq.getName() + " contains " + seq.countFeatures()
+ " features");
seq.getName() works fine, but the seq doesn't have any features, but I
can see them in the db.
What am I missing here?
Martina
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