[BioSQL-l] Link between a gene and a protein?

[Hilmar Lapp]

The bioentry_relationship table is entirely up to you how you populate that
at this point ...

I'd consider it sort of research to figure out the best or just one
reasonable way. The system that we've been building here at GNF does that a
lot. We're on the way to releasing the implementation to the public, which
for that table is all Oracle sql-scripts taking advantage of knowledge
materialized as meta-information (i.e., a custom ontology).

Basically, we're taking two approaches: harvest relationships off of dbxrefs
that can be linked back to bioentries, and harvesting relationships off of
genomic co-location. The former is working relatively well. Let me know if
you think the former is what you want and I'll ask for release clearance.

You could obviously also invent your system that works off of 'special'
features.

Sorry for not being able to be more helpful at this point.

    -hilmar   

On 10/20/03 7:48 AM, "Frederic Pecqueur" <FredericP at DEVGEN.com> wrote:

> Hi all,
> 
> I have a question about the load_seqdatabase.pl script.
> 
> Is it possible to include in a genbank file a special feature or something
> else to create a link between two bioentry.
> 
> My idea is : this feature must be recognized by the load_seqdatabase.pl script
> in the aim of create the links between the bioentry table and the bioentry
> relationship table.
> 
> may be It's not possible........
> So, I must create the links between the bioentry table and the bioentry
> relationalship table myself?
> Thanks for your help.
> Frédéric.
> 
> PS: thanks Hilmar for your solution about my RichSeq problem.
> 
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-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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