[BioSQL-l] BioSQL conflict with swissprot and NCBI taxonomy

[Hilmar Lapp]

On 11/5/03 3:16 AM, "Raphael A. Bauer" <rEyez at web.de> wrote:

> So my question is if there is a way to integrate swissprot and ncbi in
> one biosql schema.

Absolutely, but in the opposite order than you did. The problem with loading
swissprot first is that then you get about 6000-7000 taxa with unreliable
(against the NCBI taxonomy as the standard) and/or incomplete lineages.

First load the NCBI taxonomy database, only then a sequence database. Which
BTW should also rid you of some errors you will have seen when you loaded
swissprot.

    -hilmar
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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