[BioSQL-l] Can I just consider import HGI.101403 to biosequence table?

[Hilmar Lapp]

On Wednesday, December 17, 2003, at 09:26  AM, Josh Lauricha wrote:

> On a side note, is there anything thats more efficient at getting a
> sequence from BioSQL than Bio::DB::BioDB? All the transformations done
> by that interface make it too slow to use on a webpage.
>

Not for perl AFAIK. What is the response time that you're looking for? 
What is the search that you execute?

A single sequence record located by unique key should return in a 
fraction of a second that's shorter than the browser page build-up 
combined with the network latency, provided you back it with a decent 
database server.

Note that the bioperl-db code makes extensive use of caching. If you 
fire up a CGI each and every time you hit the page, you won't take any 
advantage of that.

	-hilmar
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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