[BioRuby] BioRuby Digest, Vol 110, Issue 1

Yannick Wurm y.wurm at qmul.ac.uk
Thu Mar 5 19:26:02 UTC 2015


Cheers thanks

the detailed guide would be helpful indeed :)
++
yannick

> On 5 Mar 2015, at 13:40, Francesco Strozzi <francesco.strozzi at gmail.com> wrote:
> 
> Hi Yannick,
> yes it is possible, you can just create runnable scripts without sending them through a queuing system. We are also putting together a more detailed guide, with a bit more information than the README, if you are interested let me know and we can move that online somewhere (e.g. readthedocs maybe).
> 
> For the biocore mailing list discussion, I've searched a bit and the thread was from August 2013, Title: "NGS pipeline construction tools?"
> 
> Yes, I believe Docker is a great tool and the way to go now, in my opinion. Combine that with a customisable tool that simplify the creation and running of multiple jobs and you can be a step closer to a solid reproducibility in data analysis (still with some caveats of course).
> 
> Cheers
> Francesco



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