[BioRuby] GSoC work published in Bioinformatics

Raoul J P Bonnal bonnal at ingm.org
Fri Feb 20 12:38:40 UTC 2015


Congrats. Very nice pice of software and an outstanding result.
On 2/20/15 11:46 AM, Pjotr Prins wrote:
> Sambamba was originally an OBF/BioRuby Google Summer of Code project
> and has continued to evolve and is used by many sequencing efforts:
>
>    Sambamba: fast processing of NGS alignment formats
>    Bioinformatics (2015) doi: 10.1093/bioinformatics/btv098
>    http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btv098
>
> Great job by Artem!
>
> If you can think of a project that can end in a paper, don't hesitate
> to add them to the OBF or SciRuby project ideas pages.
>
>    http://www.open-bio.org/wiki/Google_Summer_of_Code_2015_Ideas
>
>    https://github.com/SciRuby/sciruby/wiki/Google-Summer-of-Code-2015-Ideas
>
> We can help with the writeup and mentoring.
>
> Pj.
>
> PS I think especially the active gems should consider participating,
> according to biogems.info those are sequenceserver, bio-samtools and
> bio-vcf (well, the last is mine).
> _______________________________________________
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> BioRuby at mailman.open-bio.org
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