[BioRuby] Error creating Bio::KEGG::API object
Josh Earl
joshearl1 at hotmail.com
Fri Nov 15 02:19:02 UTC 2013
Hi All,
Just trying to get a script running which will (hopefully) pull down some gene sequences from Kegg. Running into this error, and haven't been able to find a solution online, anyone else have any insight into this problem? Here is the output after running "bioruby" on a fully updated Fedora 18 install tonight:
. . . B i o R u b y i n t h e s h e l l . . .
Version : BioRuby 1.4.3.0001 / Ruby 1.9.3
bioruby> Bio::KEGG::API.newNameError: uninitialized constant Bio::SOAPWSDL::SOAP from /home/josh/.rvm/gems/ruby-1.9.3-p362/gems/bio-1.4.3.0001/lib/bio/io/soapwsdl.rb:63:in `create_driver' from /home/josh/.rvm/gems/ruby-1.9.3-p362/gems/bio-1.4.3.0001/lib/bio/io/keggapi.rb:201:in `initialize' from (irb):22:in `new' from (irb):22 from /home/josh/.rvm/gems/ruby-1.9.3-p362/gems/bio-1.4.3.0001/bin/bioruby:41:in `block in <top (required)>' from /home/josh/.rvm/gems/ruby-1.9.3-p362/gems/bio-1.4.3.0001/bin/bioruby:40:in `catch' from /home/josh/.rvm/gems/ruby-1.9.3-p362/gems/bio-1.4.3.0001/bin/bioruby:40:in `<top (required)>' from /home/josh/.rvm/gems/ruby-1.9.3-p362/bin/bioruby:23:in `load' from /home/josh/.rvm/gems/ruby-1.9.3-p362/bin/bioruby:23:in `<main>' from /home/josh/.rvm/gems/ruby-1.9.3-p362/bin/ruby_noexec_wrapper:14:in `eval' from /home/josh/.rvm/gems/ruby-1.9.3-p362/bin/ruby_noexec_wrapper:14:in `<main>'
Thanks!~josh
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