[BioRuby] Outputting BioSQL sequence to genbank format

Brynjar Smári Bjarnason binni at binnisb.com
Mon Dec 9 13:50:19 UTC 2013


On 9 December 2013 14:35, Iain Barnett <iainspeed at gmail.com> wrote:

> For point 1, try
>
>     require 'bio/sequence/dblink'
>
> The file you've linked to should really do it, as each file should require
> what it needs to run. If no one else clears it up I'll do it when I get a
> mo.
>
>
This works. I'll submit a pull request for this and one other issue I
found. Thanks a lot!

Regards,
> Iain
>
>
>
> On 9 December 2013 11:14, Brynjar Smári Bjarnason <binni at binnisb.com>wrote:
>
>> Hi.
>>
>> I have created an issue on Github regarding problem I am having with
>> outputting GenBank format for BioSQL sequences.
>>
>> https://github.com/bioruby/bioruby/issues/89
>>
>> Has anyone had similar issue or knows how to get around these errors I am
>> getting?
>>
>> Best regards,
>> Brynjar
>> _______________________________________________
>> BioRuby Project - http://www.bioruby.org/
>> BioRuby mailing list
>> BioRuby at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioruby
>>
>
>




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