[BioRuby] hmmer3

[Raoul Bonnal]

If you need to wrap the binary please have a look at our wrapper. I
wondering is this wrapper could be useful to other gems, I could create a
separated gem just for it. Let me know. Docs about the wrapper is in the
readme.

https://github.com/helios/bioruby-ngs/blob/master/lib/wrapper.rb
https://github.com/helios/bioruby-ngs/blob/master/README.rdoc#wrapper
 

On 16/05/12 13.09, "Ben Woodcroft" <donttrustben at gmail.com> wrote:

> Hi guys,
> 
> I noticed today that there isn't HMMER3 support in bioruby - particularly
> I'm interested in a parser for hmmsearch outputs as I want to iterate over
> aligned positions.
> 
> I noticed that there is mention of this in the 1.4.1 release notes, that
> hmmer3 will be supported in 1.5, although I'm not sure what exactly this
> means.
> http://news.open-bio.org/news/2010/10/bioruby-1-4-1-released/
> 
> Can I ask what the state of this merge is please? Is there code somewhere
> just waiting to be merged? Can it be quickly spun out into a biogem in the
> meantime?
> 
> Thanks,
> ben